IL_4V7D_209

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UCCCAAAGUC*GCA

Length

13 nucleotides

Bulged bases

4V7D|1|AA|U|1012

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_209 not in the Motif Atlas

Geometric match to IL_5TBW_127

Geometric discrepancy: 0.2279

The information below is about IL_5TBW_127

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7D|1|AA|U|1004
4V7D|1|AA|C|1005
4V7D|1|AA|C|1006
4V7D|1|AA|C|1007
4V7D|1|AA|A|1008
4V7D|1|AA|A|1009
4V7D|1|AA|A|1010
4V7D|1|AA|G|1011
4V7D|1|AA|U|1012
4V7D|1|AA|C|1013
*
4V7D|1|AA|G|1149
4V7D|1|AA|C|1150
4V7D|1|AA|A|1151

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L13

Chain AT

50S ribosomal protein L20