IL_4V7D_211

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CGUUC*GAAGUG

Length

11 nucleotides

Bulged bases

4V7D|1|AA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_211 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3045

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V7D|1|AA|C|1196
4V7D|1|AA|G|1197
4V7D|1|AA|U|1198
4V7D|1|AA|U|1199
4V7D|1|AA|C|1200
*
4V7D|1|AA|G|1245
4V7D|1|AA|A|1246
4V7D|1|AA|A|1247
4V7D|1|AA|G|1248
4V7D|1|AA|U|1249
4V7D|1|AA|G|1250

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15

Chain AT

50S ribosomal protein L20