IL_4V7D_212

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GCGAGG*CGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_212 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.3341

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V7D|1|AA|G|1356
4V7D|1|AA|C|1357
4V7D|1|AA|G|1358
4V7D|1|AA|A|1359
4V7D|1|AA|G|1360
4V7D|1|AA|G|1361
*
4V7D|1|AA|C|1370
4V7D|1|AA|G|1371
4V7D|1|AA|U|1372
4V7D|1|AA|A|1373
4V7D|1|AA|G|1374
4V7D|1|AA|U|1375

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain A6

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2