IL_4V7D_259

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_259 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.3678

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V7D|1|AA|G|1846
4V7D|1|AA|A|1847
4V7D|1|AA|A|1848
4V7D|1|AA|G|1849
*
4V7D|1|AA|C|1893
4V7D|1|AA|C|1894

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BW

Transfer RNA; tRNA