IL_4V7D_263

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

4V7D|1|AA|C|2164, 4V7D|1|AA|C|2165, 4V7D|1|AA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_263 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.3067

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4V7D|1|AA|G|2123
4V7D|1|AA|G|2124
4V7D|1|AA|G|2125
4V7D|1|AA|A|2126
4V7D|1|AA|G|2127
4V7D|1|AA|G|2128
*
4V7D|1|AA|C|2160
4V7D|1|AA|C|2161
4V7D|1|AA|G|2162
4V7D|1|AA|A|2163
4V7D|1|AA|C|2164
4V7D|1|AA|C|2165
4V7D|1|AA|U|2166
4V7D|1|AA|U|2167
4V7D|1|AA|G|2168
4V7D|1|AA|A|2169
4V7D|1|AA|A|2170
4V7D|1|AA|A|2171
4V7D|1|AA|U|2172
4V7D|1|AA|A|2173
4V7D|1|AA|C|2174
4V7D|1|AA|C|2175

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BW

Transfer RNA; tRNA