IL_4V7E_001

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCAGG*CCUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|U|14
4V7E|1|Aa|C|15
4V7E|1|Aa|A|16
4V7E|1|Aa|G|17
4V7E|1|Aa|G|18
*
4V7E|1|Ac|C|143
4V7E|1|Ac|C|144
4V7E|1|Ac|U|145
4V7E|1|Ac|G|146

Current chains

Chain Aa

60S ribosomal RNA

Chain Ac

5.8S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L8E

Chain CN

60S ribosomal protein L15E

Chain CX

60S ribosomal protein L23

Chain Ch

60S ribosomal protein L29