IL_4V7E_002
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUGAGUUU*AUAAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_002 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0978
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Aa|C|30
4V7E|1|Aa|U|31
4V7E|1|Aa|G|32
4V7E|1|Aa|A|33
4V7E|1|Aa|G|34
4V7E|1|Aa|U|35
4V7E|1|Aa|U|36
4V7E|1|Aa|U|37
*
4V7E|1|Aa|A|44
4V7E|1|Aa|U|45
4V7E|1|Aa|A|46
4V7E|1|Aa|A|47
4V7E|1|Aa|A|48
4V7E|1|Aa|U|49
4V7E|1|Aa|A|50
4V7E|1|Aa|A|51
4V7E|1|Aa|G|52
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CL
- 60S ribosomal protein L13E
- Chain CN
- 60S ribosomal protein L15E
- Chain Ca
- 60S ribosomal protein L15
- Chain Cj
- 60S ribosomal protein L37E
- Chain Co
- 60S ribosomal protein L44E
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