IL_4V7E_004
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AU*AAUUGU
- Length
- 8 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|146
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_004 not in the Motif Atlas
- Homologous match to IL_5TBW_007
- Geometric discrepancy: 0.169
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Aa|A|122
4V7E|1|Aa|U|123
*
4V7E|1|Aa|A|143
4V7E|1|Aa|A|144
4V7E|1|Aa|U|145
4V7E|1|Aa|U|146
4V7E|1|Aa|G|147
4V7E|1|Aa|U|148
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CG
- 60S ribosomal protein L8E
- Chain CN
- 60S ribosomal protein L15E
- Chain Ch
- 60S ribosomal protein L29
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