IL_4V7E_012
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGAC*GAGUCAAAGAGUGC
- Length
- 18 nucleotides
- Bulged bases
- 4V7E|1|Aa|G|396, 4V7E|1|Aa|G|400
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_012 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1273
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V7E|1|Aa|G|374
4V7E|1|Aa|G|375
4V7E|1|Aa|A|376
4V7E|1|Aa|C|377
*
4V7E|1|Aa|G|388
4V7E|1|Aa|A|389
4V7E|1|Aa|G|390
4V7E|1|Aa|U|391
4V7E|1|Aa|C|392
4V7E|1|Aa|A|393
4V7E|1|Aa|A|394
4V7E|1|Aa|A|395
4V7E|1|Aa|G|396
4V7E|1|Aa|A|397
4V7E|1|Aa|G|398
4V7E|1|Aa|U|399
4V7E|1|Aa|G|400
4V7E|1|Aa|C|401
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CP
- 60S ribosomal protein L22
- Chain CY
- 60S ribosomal protein L24
- Chain Cl
- 60S ribosomal protein L39E
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