IL_4V7E_014

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGG*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_014 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.2666

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V7E|1|Aa|C|412
4V7E|1|Aa|G|413
4V7E|1|Aa|G|414
*
4V7E|1|Ac|U|7
4V7E|1|Ac|C|8
4V7E|1|Ac|G|9

Current chains

Chain Aa

60S ribosomal RNA

Chain Ac

5.8S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L22

Chain Ce

60S ribosomal protein L32E