IL_4V7E_030
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUGAUC*GUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_030 not in the Motif Atlas
- Geometric match to IL_5J7L_057
- Geometric discrepancy: 0.227
- The information below is about IL_5J7L_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V7E|1|Aa|C|761
4V7E|1|Aa|U|762
4V7E|1|Aa|G|763
4V7E|1|Aa|A|764
4V7E|1|Aa|U|765
4V7E|1|Aa|C|766
*
4V7E|1|Aa|G|771
4V7E|1|Aa|U|772
4V7E|1|Aa|G|773
4V7E|1|Aa|A|774
4V7E|1|Aa|A|775
4V7E|1|Aa|G|776
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L13E
- Chain Ca
- 60S ribosomal protein L15
- Chain Cb
- 60S ribosomal protein L29E
- Chain Co
- 60S ribosomal protein L44E
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