IL_4V7E_033

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

4V7E|1|Aa|G|863

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_033 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2299

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|G|836
4V7E|1|Aa|C|837
4V7E|1|Aa|G|838
4V7E|1|Aa|A|839
4V7E|1|Aa|A|840
4V7E|1|Aa|G|841
*
4V7E|1|Aa|U|858
4V7E|1|Aa|G|859
4V7E|1|Aa|G|860
4V7E|1|Aa|A|861
4V7E|1|Aa|G|862
4V7E|1|Aa|G|863
4V7E|1|Aa|C|864

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain CR

60S ribosomal protein L19E

Chain Cp

60S ribosomal protein L43E