IL_4V7E_040

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAUUAC*GGG

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|G|1106

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_040 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.5635

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|C|980
4V7E|1|Aa|A|981
4V7E|1|Aa|U|982
4V7E|1|Aa|U|983
4V7E|1|Aa|A|984
4V7E|1|Aa|C|985
*
4V7E|1|Aa|G|1105
4V7E|1|Aa|G|1106
4V7E|1|Aa|G|1107

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L30

Chain CQ

60S ribosomal protein L18E

Chain Cb

60S ribosomal protein L29E