IL_4V7E_041

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

4V7E|1|Aa|G|988

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_041 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.2361

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V7E|1|Aa|A|987
4V7E|1|Aa|G|988
4V7E|1|Aa|U|989
*
4V7E|1|Aa|A|1102
4V7E|1|Aa|U|1103

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L30

Chain CQ

60S ribosomal protein L18E

Chain CT

60S ribosomal protein L21E

Chain Cb

60S ribosomal protein L29E