IL_4V7E_043

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_043 not in the Motif Atlas

Homologous match to IL_5TBW_039

Geometric discrepancy: 0.3308

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V7E|1|Aa|A|1001
4V7E|1|Aa|A|1002
*
4V7E|1|Aa|U|1054
4V7E|1|Aa|U|1055
4V7E|1|Aa|U|1056

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ab

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L18

Chain CI

60S ribosomal protein L16

Chain CT

60S ribosomal protein L21E