IL_4V7E_046

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_046 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.0928

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7E|1|Aa|A|1013
4V7E|1|Aa|G|1014
4V7E|1|Aa|A|1015
*
4V7E|1|Aa|U|1043
4V7E|1|Aa|A|1044
4V7E|1|Aa|U|1045

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ab

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L18

Chain CI

60S ribosomal protein L16