IL_4V7E_058
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|1212
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_058 not in the Motif Atlas
- Homologous match to IL_8C3A_056
- Geometric discrepancy: 0.1246
- The information below is about IL_8C3A_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4V7E|1|Aa|G|1211
4V7E|1|Aa|U|1212
4V7E|1|Aa|G|1213
*
4V7E|1|Aa|C|1300
4V7E|1|Aa|C|1301
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ab
- 5S ribosomal RNA; 5S rRNA
- Chain CH
- 60S ribosomal protein L6
- Chain CO
- 60S ribosomal protein L13
- Chain CS
- 60S ribosomal protein L20
- Chain Cm
- 60S ribosomal protein L40E
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