IL_4V7E_060

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUAAGACAGCA*UGCCGAA

Length

18 nucleotides

Bulged bases

4V7E|1|Aa|A|1225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|U|1222
4V7E|1|Aa|U|1223
4V7E|1|Aa|A|1224
4V7E|1|Aa|A|1225
4V7E|1|Aa|G|1226
4V7E|1|Aa|A|1227
4V7E|1|Aa|C|1228
4V7E|1|Aa|A|1229
4V7E|1|Aa|G|1230
4V7E|1|Aa|C|1231
4V7E|1|Aa|A|1232
*
4V7E|1|Aa|U|1285
4V7E|1|Aa|G|1286
4V7E|1|Aa|C|1287
4V7E|1|Aa|C|1288
4V7E|1|Aa|G|1289
4V7E|1|Aa|A|1290
4V7E|1|Aa|A|1291

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CS

60S ribosomal protein L20

Chain Cm

60S ribosomal protein L40E

Chain Cq

60S acidic ribosomal protein P0