IL_4V7E_062

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_062 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1715

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V7E|1|Aa|C|1346
4V7E|1|Aa|U|1347
4V7E|1|Aa|G|1348
*
4V7E|1|Aa|C|1364
4V7E|1|Aa|C|1365
4V7E|1|Aa|G|1366

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L30

Chain CQ

60S ribosomal protein L18E

Chain Ce

60S ribosomal protein L32E