IL_4V7E_065

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUGCAAAAC*GCGGAGC

Length

17 nucleotides

Bulged bases

4V7E|1|Aa|C|1394

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|G|1390
4V7E|1|Aa|A|1391
4V7E|1|Aa|U|1392
4V7E|1|Aa|G|1393
4V7E|1|Aa|C|1394
4V7E|1|Aa|A|1395
4V7E|1|Aa|A|1396
4V7E|1|Aa|A|1397
4V7E|1|Aa|A|1398
4V7E|1|Aa|C|1399
*
4V7E|1|Aa|G|1417
4V7E|1|Aa|C|1418
4V7E|1|Aa|G|1419
4V7E|1|Aa|G|1420
4V7E|1|Aa|A|1421
4V7E|1|Aa|G|1422
4V7E|1|Aa|C|1423

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ac

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L22

Chain CY

60S ribosomal protein L24

Chain Ce

60S ribosomal protein L32E