IL_4V7E_078

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_078 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.1652

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V7E|1|Aa|U|1668
4V7E|1|Aa|C|1669
4V7E|1|Aa|G|1670
*
4V7E|1|Aa|C|1770
4V7E|1|Aa|G|1771
4V7E|1|Aa|G|1772

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain CU

60S ribosomal protein L22E