IL_4V7E_088

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_088 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.2224

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7E|1|Aa|G|1936
4V7E|1|Aa|C|1937
4V7E|1|Aa|U|1938
*
4V7E|1|Aa|A|2100
4V7E|1|Aa|A|2101
4V7E|1|Aa|C|2102

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain CR

60S ribosomal protein L19E