IL_4V7E_092

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_092 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1985

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V7E|1|Aa|G|1969
4V7E|1|Aa|A|1970
4V7E|1|Aa|A|1971
4V7E|1|Aa|C|1972
*
4V7E|1|Aa|G|2041
4V7E|1|Aa|G|2042
4V7E|1|Aa|A|2043
4V7E|1|Aa|C|2044

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ck

60S ribosomal protein L38E