IL_4V7E_099

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AUUGCGAUGG*UGCUGACGCAAUGU

Length

24 nucleotides

Bulged bases

4V7E|1|Aa|U|2153, 4V7E|1|Aa|C|2168, 4V7E|1|Aa|C|2172, 4V7E|1|Aa|U|2177, 4V7E|1|Aa|G|2178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|A|2146
4V7E|1|Aa|U|2147
4V7E|1|Aa|U|2148
4V7E|1|Aa|G|2149
4V7E|1|Aa|C|2150
4V7E|1|Aa|G|2151
4V7E|1|Aa|A|2152
4V7E|1|Aa|U|2153
4V7E|1|Aa|G|2154
4V7E|1|Aa|G|2155
*
4V7E|1|Aa|U|2166
4V7E|1|Aa|G|2167
4V7E|1|Aa|C|2168
4V7E|1|Aa|U|2169
4V7E|1|Aa|G|2170
4V7E|1|Aa|A|2171
4V7E|1|Aa|C|2172
4V7E|1|Aa|G|2173
4V7E|1|Aa|C|2174
4V7E|1|Aa|A|2175
4V7E|1|Aa|A|2176
4V7E|1|Aa|U|2177
4V7E|1|Aa|G|2178
4V7E|1|Aa|U|2179

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L2

Chain CN

60S ribosomal protein L15E

Chain Cp

60S ribosomal protein L43E