IL_4V7E_100

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUC,GAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_100 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1312

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V7E|1|Aa|U|2185
4V7E|1|Aa|U|2186
4V7E|1|Aa|C|2187
*
4V7E|1|Aa|G|2310
4V7E|1|Aa|A|2311
4V7E|1|Aa|A|2312

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L2

Chain Cn

60S ribosomal protein L41E

Chain Cp

60S ribosomal protein L43E