IL_4V7E_103

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

4V7E|1|Aa|U|2200

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_103 not in the Motif Atlas

Homologous match to IL_5TBW_086

Geometric discrepancy: 0.2482

The information below is about IL_5TBW_086

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V7E|1|Aa|C|2199
4V7E|1|Aa|U|2200
4V7E|1|Aa|G|2201
*
4V7E|1|Aa|C|2232
4V7E|1|Aa|G|2233

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L2