IL_4V7E_111

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V7E|1|Aa|A|2810

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_111 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.1063

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V7E|1|Aa|G|2411
4V7E|1|Aa|A|2412
*
4V7E|1|Aa|U|2809
4V7E|1|Aa|A|2810
4V7E|1|Aa|C|2811
4V7E|1|Aa|C|2812

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain CA

60S ribosomal protein L2