IL_4V7E_112

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V7E|1|Aa|G|2609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_112 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1877

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

4V7E|1|Aa|U|2422
4V7E|1|Aa|A|2423
4V7E|1|Aa|G|2424
*
4V7E|1|Aa|U|2607
4V7E|1|Aa|G|2608
4V7E|1|Aa|G|2609
4V7E|1|Aa|G|2610

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain CN

60S ribosomal protein L15E

Chain Co

60S ribosomal protein L44E