IL_4V7E_115

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AUGACU*ACGUUAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|A|2439
4V7E|1|Aa|U|2440
4V7E|1|Aa|G|2441
4V7E|1|Aa|A|2442
4V7E|1|Aa|C|2443
4V7E|1|Aa|U|2444
*
4V7E|1|Aa|A|2504
4V7E|1|Aa|C|2505
4V7E|1|Aa|G|2506
4V7E|1|Aa|U|2507
4V7E|1|Aa|U|2508
4V7E|1|Aa|A|2509
4V7E|1|Aa|U|2510

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S1E

Chain CG

60S ribosomal protein L8E

Chain Ci

60S ribosomal protein L36E

Chain Cz

60S ribosomal protein L1