IL_4V7E_120
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GUGGGUC*GGGC
- Length
- 11 nucleotides
- Bulged bases
- 4V7E|1|Aa|G|2525, 4V7E|1|Aa|G|2588, 4V7E|1|Aa|G|2589
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_120 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.3519
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Aa|G|2523
4V7E|1|Aa|U|2524
4V7E|1|Aa|G|2525
4V7E|1|Aa|G|2526
4V7E|1|Aa|G|2527
4V7E|1|Aa|U|2528
4V7E|1|Aa|C|2529
*
4V7E|1|Aa|G|2587
4V7E|1|Aa|G|2588
4V7E|1|Aa|G|2589
4V7E|1|Aa|C|2590
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- 60S ribosomal protein L2
- Chain CG
- 60S ribosomal protein L8E
- Chain CX
- 60S ribosomal protein L23
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