IL_4V7E_125

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_125 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.1442

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V7E|1|Aa|U|2828
4V7E|1|Aa|U|2829
4V7E|1|Aa|G|2830
*
4V7E|1|Aa|U|2864
4V7E|1|Aa|G|2865

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ae

Transfer RNA; tRNA

Chain CI

60S ribosomal protein L16