IL_4V7E_134

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_134 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.1181

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V7E|1|Aa|G|2959
4V7E|1|Aa|A|2960
4V7E|1|Aa|C|2961
*
4V7E|1|Aa|G|2975
4V7E|1|Aa|U|2976
4V7E|1|Aa|U|2977

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2