IL_4V7E_138

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAC,GUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_138 not in the Motif Atlas

Geometric match to IL_4P43_004

Geometric discrepancy: 0.1832

The information below is about IL_4P43_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7E|1|Aa|A|3017
4V7E|1|Aa|A|3018
4V7E|1|Aa|C|3019
*
4V7E|1|Aa|G|3037
4V7E|1|Aa|U|3038
4V7E|1|Aa|U|3039

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CH

60S ribosomal protein L6

Chain CV

60S ribosomal protein L14