IL_4V7E_150

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCCG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_150 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.2898

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|U|3227
4V7E|1|Aa|C|3228
4V7E|1|Aa|C|3229
4V7E|1|Aa|G|3230
*
4V7E|1|Aa|C|3241
4V7E|1|Aa|G|3242
4V7E|1|Aa|C|3243
4V7E|1|Aa|G|3244

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CM

60S ribosomal protein L14E

Chain CO

60S ribosomal protein L13