IL_4V7E_161
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUAAGGCA*UUAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_161 not in the Motif Atlas
- Homologous match to IL_4WF9_113
- Geometric discrepancy: 0.5967
- The information below is about IL_4WF9_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19048.1
- Basepair signature
- cWW-L-R-L-R-L-cSH-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V7E|1|Ab|C|20
4V7E|1|Ab|U|21
4V7E|1|Ab|A|22
4V7E|1|Ab|A|23
4V7E|1|Ab|G|24
4V7E|1|Ab|G|25
4V7E|1|Ab|C|26
4V7E|1|Ab|A|27
*
4V7E|1|Ab|U|52
4V7E|1|Ab|U|53
4V7E|1|Ab|A|54
4V7E|1|Ab|A|55
4V7E|1|Ab|G|56
4V7E|1|Ab|C|57
4V7E|1|Ab|G|58
Current chains
- Chain Ab
- 5S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L18
- Chain CJ
- 60S ribosomal protein L5
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