IL_4V7E_166

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_166 not in the Motif Atlas

Geometric match to IL_3GM7_002

Geometric discrepancy: 0.1394

The information below is about IL_3GM7_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V7E|1|Ab|A|80
4V7E|1|Ab|G|81
4V7E|1|Ab|G|82
*
4V7E|1|Ab|C|94
4V7E|1|Ab|U|95
4V7E|1|Ab|U|96

Current chains

Chain Ab

5S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain CF

60S ribosomal protein L30

Chain CS

60S ribosomal protein L20