IL_4V7E_169
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GU*ACC
- Length
- 5 nucleotides
- Bulged bases
- 4V7E|1|Ac|C|90
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_169 not in the Motif Atlas
- Geometric match to IL_3W3S_001
- Geometric discrepancy: 0.397
- The information below is about IL_3W3S_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 60
Unit IDs
4V7E|1|Ac|G|68
4V7E|1|Ac|U|69
*
4V7E|1|Ac|A|89
4V7E|1|Ac|C|90
4V7E|1|Ac|C|91
Current chains
- Chain Ac
- 5.8S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain CY
- 60S ribosomal protein L24
- Chain Ch
- 60S ribosomal protein L29
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
Coloring options: