IL_4V7E_170
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGAAU*GAAUCCCGUGAA
- Length
- 17 nucleotides
- Bulged bases
- 4V7E|1|Ac|C|84, 4V7E|1|Ac|U|86
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_170 not in the Motif Atlas
- Homologous match to IL_5TBW_147
- Geometric discrepancy: 0.231
- The information below is about IL_5TBW_147
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_39287.1
- Basepair signature
- cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
4V7E|1|Ac|U|69
4V7E|1|Ac|G|70
4V7E|1|Ac|A|71
4V7E|1|Ac|A|72
4V7E|1|Ac|U|73
*
4V7E|1|Ac|G|78
4V7E|1|Ac|A|79
4V7E|1|Ac|A|80
4V7E|1|Ac|U|81
4V7E|1|Ac|C|82
4V7E|1|Ac|C|83
4V7E|1|Ac|C|84
4V7E|1|Ac|G|85
4V7E|1|Ac|U|86
4V7E|1|Ac|G|87
4V7E|1|Ac|A|88
4V7E|1|Ac|A|89
Current chains
- Chain Ac
- 5.8S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain CY
- 60S ribosomal protein L24
- Chain Ch
- 60S ribosomal protein L29
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
Coloring options: