IL_4V7E_174
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 4V7E|1|Ad|A|472
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_174 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.3841
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
4V7E|1|Ad|U|37
4V7E|1|Ad|C|38
4V7E|1|Ad|A|39
4V7E|1|Ad|A|40
4V7E|1|Ad|A|41
*
4V7E|1|Ad|U|470
4V7E|1|Ad|G|471
4V7E|1|Ad|A|472
4V7E|1|Ad|C|473
4V7E|1|Ad|A|474
4V7E|1|Ad|A|475
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BJ
- 40S ribosomal protein S4
- Chain BY
- 40S ribosomal protein S24E
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