IL_4V7E_188

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_188 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4615

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

4V7E|1|Ad|U|322
4V7E|1|Ad|U|323
4V7E|1|Ad|U|324
4V7E|1|Ad|C|325
4V7E|1|Ad|G|326
4V7E|1|Ad|A|327
*
4V7E|1|Ad|U|349
4V7E|1|Ad|G|350

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BL

40S ribosomal protein S17

Chain CR

60S ribosomal protein L19E