IL_4V7E_199

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

4V7E|1|Ad|A|623, 4V7E|1|Ad|A|624

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_199 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.2123

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|G|620
4V7E|1|Ad|U|621
4V7E|1|Ad|U|622
4V7E|1|Ad|A|623
4V7E|1|Ad|A|624
4V7E|1|Ad|A|625
4V7E|1|Ad|A|626
*
4V7E|1|Ad|U|1109
4V7E|1|Ad|C|1110

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BX

40S ribosomal protein S12

Chain Ba

40S ribosomal protein S26E

Chain Cn

60S ribosomal protein L41E