IL_4V7E_202

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_202 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.2155

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7E|1|Ad|G|645
4V7E|1|Ad|G|646
4V7E|1|Ad|G|647
*
4V7E|1|Ad|C|704
4V7E|1|Ad|A|705
4V7E|1|Ad|U|706

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BH

40S ribosomal protein S7E

Chain BW

40S ribosomal protein S8