IL_4V7E_205

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAGAAAUUA*UACAUUAGC

Length

19 nucleotides

Bulged bases

4V7E|1|Ad|U|800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|G|757
4V7E|1|Ad|A|758
4V7E|1|Ad|A|759
4V7E|1|Ad|G|760
4V7E|1|Ad|A|761
4V7E|1|Ad|A|762
4V7E|1|Ad|A|763
4V7E|1|Ad|U|764
4V7E|1|Ad|U|765
4V7E|1|Ad|A|766
*
4V7E|1|Ad|U|796
4V7E|1|Ad|A|797
4V7E|1|Ad|C|798
4V7E|1|Ad|A|799
4V7E|1|Ad|U|800
4V7E|1|Ad|U|801
4V7E|1|Ad|A|802
4V7E|1|Ad|G|803
4V7E|1|Ad|C|804

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4E

Chain BJ

40S ribosomal protein S4

Chain BL

40S ribosomal protein S17

Chain BW

40S ribosomal protein S8