IL_4V7E_208

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_208 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.17

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

4V7E|1|Ad|A|870
4V7E|1|Ad|G|871
*
4V7E|1|Ad|C|967
4V7E|1|Ad|A|968
4V7E|1|Ad|U|969
4V7E|1|Ad|U|970

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BN

40S ribosomal protein S15

Chain BW

40S ribosomal protein S8

Chain Bb

40S ribosomal protein S27E