IL_4V7E_209

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

4V7E|1|Ad|U|964

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_209 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1348

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V7E|1|Ad|G|872
4V7E|1|Ad|G|873
4V7E|1|Ad|A|874
4V7E|1|Ad|C|875
*
4V7E|1|Ad|G|962
4V7E|1|Ad|U|963
4V7E|1|Ad|U|964
4V7E|1|Ad|U|965
4V7E|1|Ad|U|966

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BN

40S ribosomal protein S15

Chain Bb

40S ribosomal protein S27E

Chain Cc

60S ribosomal protein L30E