IL_4V7E_213
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UAGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 4V7E|1|Ad|G|918
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_213 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3246
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V7E|1|Ad|U|898
4V7E|1|Ad|A|899
4V7E|1|Ad|G|900
4V7E|1|Ad|U|901
4V7E|1|Ad|C|902
4V7E|1|Ad|A|903
4V7E|1|Ad|G|904
*
4V7E|1|Ad|C|915
4V7E|1|Ad|U|916
4V7E|1|Ad|U|917
4V7E|1|Ad|G|918
4V7E|1|Ad|G|919
4V7E|1|Ad|A|920
4V7E|1|Ad|U|921
4V7E|1|Ad|U|922
4V7E|1|Ad|U|923
4V7E|1|Ad|A|924
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 40S ribosomal protein S1E
- Chain BO
- 40S ribosomal protein S11
- Chain CA
- 60S ribosomal protein L2
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