IL_4V7E_215
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGGCUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_215 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.2102
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Ad|G|990
4V7E|1|Ad|G|991
4V7E|1|Ad|G|992
4V7E|1|Ad|C|993
4V7E|1|Ad|U|994
4V7E|1|Ad|C|995
*
4V7E|1|Ad|G|1019
4V7E|1|Ad|U|1020
4V7E|1|Ad|C|1021
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 40S ribosomal protein S11
- Chain Ba
- 40S ribosomal protein S26E
- Chain CA
- 60S ribosomal protein L2
- Chain Cp
- 60S ribosomal protein L43E
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