IL_4V7E_219

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUG*CUC

Length

7 nucleotides

Bulged bases

4V7E|1|Ad|U|1057

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_219 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.2217

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V7E|1|Ad|G|1055
4V7E|1|Ad|A|1056
4V7E|1|Ad|U|1057
4V7E|1|Ad|G|1058
*
4V7E|1|Ad|C|1071
4V7E|1|Ad|U|1072
4V7E|1|Ad|C|1073

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein S2

Chain BB

40S ribosomal protein S1E

Chain Bb

40S ribosomal protein S27E