IL_4V7E_227

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_227 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.1604

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V7E|1|Ad|G|1217
4V7E|1|Ad|U|1218
4V7E|1|Ad|C|1219
*
4V7E|1|Ad|G|1454
4V7E|1|Ad|U|1455
4V7E|1|Ad|U|1456

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10E

Chain Bd

40S ribosomal protein S14

Chain Bf

40S ribosomal protein S31e