IL_4V7E_228

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCAAGGA*UUC

Length

10 nucleotides

Bulged bases

4V7E|1|Ad|G|1232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|G|1228
4V7E|1|Ad|C|1229
4V7E|1|Ad|A|1230
4V7E|1|Ad|A|1231
4V7E|1|Ad|G|1232
4V7E|1|Ad|G|1233
4V7E|1|Ad|A|1234
*
4V7E|1|Ad|U|1261
4V7E|1|Ad|U|1262
4V7E|1|Ad|C|1263

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10E

Chain BM

40S ribosomal protein S12E

Chain Bf

40S ribosomal protein S31e